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E. Yarali

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Doctoral thesis (2025) - E. Yarali, A.A. Zadpoor, A. Accardo, M. J. Mirzaali
A complex interplay of material, mechanical, and biological factors governs the performance of bone implants and scaffolds. Key determinants include surface functionalization, Young’s modulus of the base material (e.g., metals, or polymers), morphometric properties (e.g., curvature, porosity), mechanical features (e.g., effective elastic modulus, and Poisson’s ratio, defined as the negative ratio of transverse strain to longitudinal strain), and mass transport parameters (e.g., permeability). All these properties are often designed to enhance osseointegration significantly within the context of both bone replacement and regeneration. Regarding Poisson’s ratio, auxeticity (i.e., negative values of Poisson’s ratio) is a distinct property of trabecular bone, which assumes a high relevance for implant design.
To address these challenges, meta-biomaterials offer a unique opportunity to tune all the above-mentioned properties, enhancing the rate of tissue regeneration. These designer materials derive their effective properties mainly from their engineered microarchitecture rather than solely from their material composition. This has led to the development of meta-implants, a new generation of bone implants that exhibit rare or unprecedented functionalities. Conventional solid hip joint implants are mainly under mechanical bending, and due to their design, a physical gap may be created between the surrounding bone and the implant in such conventional implants. Under such circumstances, the particles released from the bearing surfaces may enter the gap and trigger an inflammatory response, replacing the bone tissue with fibrous tissue around the implant, a process known as osteolysis. On the other hand, meta-implants minimize the risk of such physical gaps between the surrounding bone and implants, thereby reducing the risk of implant loosening.
While the next generation of “hip meta-implants” addresses this issue by using auxeticity to minimize the risk of gaps forming, a fundamental challenge remains: “How can the effects of auxeticity on cell and tissue response be studied in isolation from many intrinsically coupled properties of meta-biomaterials (e.g., elastic/shear moduli, porosity, pore size, permeability)?” This question forms the core of my dissertation, which focuses on decoupling Poisson’s ratio from interdependent scaffold properties to achieve tunable auxetic behavior while preserving structural and functional integrity. Beyond structural design, understanding how Poisson’s ratio influences bone cell mechanobiology is vital for ensuring meta-implants promote healthy tissue regeneration. This leads to a key sub-question: “How does Poisson’s ratio affect bone cell response in meta-biomaterials?” Exploring this extends the research into the biological implications of meta-biomaterials.
Addressing these challenges demands an interdisciplinary approach, including i. mechanical design to isolate Poisson’s ratio from all other scaffold properties, ii.additive manufacturing (AM) of meta-biomaterials and their mechanical characterizations, iii. bone cell culture of meta-biomaterials and their cellular assessments, and iv. creating shape-morphing meta-biomaterials via 4D bioprinting for prospective dynamic cell culture studies. ...
Incorporating shape-morphing capability into 3D microprinting enables the fabrication of 4D-printed microarchitectures as proof-of-concept actuators for potential use in soft robotics and microfluidic systems. The ability of these 3D microstructures to actuate rapidly and reversibly enables precise, non-invasive, and controllable deformation. In this study, we investigated the programmable shape-morphing behavior of 3D microarchitectures fabricated using two-photon polymerization (2PP) of a well-established temperature-responsive hydrogel, poly(N-isopropylacrylamide) (pNIPAM). We first systematically studied how 2PP 3D printing parameters (e.g., laser power, scanning speed) and the chemical composition of pNIPAM, including monomer and crosslinker, influence the shape morphing of bilayer microstructures within a temperature range of ~ 32 °C to 60 °C. The (thermo)mechanical properties of the hydrogels, including the Young’s modulus, thermal expansion coefficients, and angular deflection, were also measured at different laser doses and temperatures. Based on these experimental measurements, we calibrated a thermomechanical model capable of predicting the shape morphing of 4D-printed microarchitectures. These microarchitectures served as proof-of-concept actuators, demonstrating the potential of programmable microscale soft robotics and microfluidic systems. The findings provide design guidelines for engineering stimuli-responsive 3D microstructures, highlighting limitations and opportunities for future integration into functional soft robotic or microfluidic systems made of a single material. ...
4D (bio-)printing endows 3D printed (bio-)materials with multiple functionalities and dynamic properties. 4D printed materials have been recently used in biomedical engineering for the design and fabrication of biomedical devices, such as stents, occluders, microneedles, smart 3D-cell engineered microenvironments, drug delivery systems, wound closures, and implantable medical devices. However, the success of 4D printing relies on the rational design of 4D printed objects, the selection of smart materials, and the availability of appropriate types of external (multi-)stimuli. Here, this work first highlights the different types of smart materials, external stimuli, and design strategies used in 4D (bio-)printing. Then, it presents a critical review of the biomedical applications of 4D printing and discusses the future directions of biomedical research in this exciting area, including in vivo tissue regeneration studies, the implementation of multiple materials with reversible shape memory behaviors, the creation of fast shape-transformation responses, the ability to operate at the microscale, untethered activation and control, and the application of (machine learning-based) modeling approaches to predict the structure–property and design–shape transformation relationships of 4D (bio)printed constructs. ...
Emerging 4D printing techniques have enabled the realization of smart materials whose shape or properties can change with time. Two important phenomena play important roles in the 4D printing of shape memory polymeric materials. First, the anisotropic deformation of the printed filaments due to residual stresses can be harnessed to create out-of-plane shape transformations. Second, the unavoidable formation of micro-defects during the printing processes often affects the programmability of the printed object. Here, we propose a design approach that harnesses these two effects occurring during fused deposition modeling to create tailor-made curved geometries from initially 2D flat disks. We first determined the size and distribution of the imperfections formed within printed structures by varying two printing parameters namely the printing speed and the number of printed materials. Spatially varying the printing speed and combining polylactic acid filaments with a softer material without shape memory properties allowed us to cover a variety of shapes from negative to positive values of the mean and Gaussian curvature. We propose an analytical model to calculate the magnitude of the maximum out-of-plane deformation from the anisotropic expansion factor of the constituting microstructures. Furthermore, we develop computational models to predict the complex shape-changing of thermally actuated 4D printed structures given the distribution of rationally introduced imperfections and we demonstrate the potential applications of such defect-based metamaterials in drug delivery systems. ...
The Poisson's ratio and elastic modulus are two parameters determining the elastic behavior of biomaterials. While the effects of elastic modulus on the cell response is widely studied, very little is known regarding the effects of the Poisson's ratio. The micro-architecture of meta-biomaterials determines not only the Poisson's ratio but also several other parameters that also influence cell response, such as porosity, pore size, and effective elastic modulus. It is, therefore, very challenging to isolate the effects of the Poisson's ratio from those of other micro-architectural parameters. Here, we computationally design meta-biomaterials with controlled Poisson's ratios, ranging between -0.74 and +0.74, while maintaining consistent porosity, pore size, and effective elastic modulus. The 3D meta-biomaterials were additively manufactured at the micro-scale using two-photon polymerization (2PP), and were mechanically evaluated at the meso‑scale. The response of murine preosteoblasts to these meta-biomaterials was then studied using in vitro cell culture models. Meta-biomaterials with positive Poisson's ratios resulted in higher metabolic activity than those with negative values. The cells could attach and infiltrate all meta-biomaterials from the bottom to the top, fully covering the scaffolds after 17 days of culture. Interestingly, the meta-biomaterials exhibited different cell-induced deformations (e.g., shrinkage or local bending) as observed via scanning electron microscopy. The outcomes of osteogenic differentiation (i.e., Runx2 immunofluorescent staining) and matrix mineralization (i.e., Alizarin red staining) assays indicated the significant potential impact of these meta-biomaterials in the field of bone tissue engineering, paving the way for the development of advanced bone meta-implants. Statement of significance: We studied the influence of Poisson's ratio on bone cell response in meta-biomaterials. While elastic modulus effects are well-studied, the impact of Poisson's ratio, especially negative values found in architected biomaterials, remains largely unexplored. The complexity arises from intertwined micro-architectural parameters, such as porosity and elastic modulus, making it challenging to isolate the Poisson's ratio. To overcome this limitation, this study employed rational computational design to create meta-biomaterials with controlled Poisson's ratios, alongside consistent effective elastic modulus, porosity, and pore size. The study reveals that two-photon polymerized 3D meta-biomaterials with positive Poisson's ratios displayed higher metabolic activity, while all the developed meta-biomaterials supported osteogenic differentiation of preosteoblasts as well as matrix mineralization. The outcomes pave the way for the development of advanced 3D bone tissue models and meta-implants. ...
Mechanical and morphological design parameters, such as stiffness or porosity, play important roles in creating orthopedic implants and bone substitutes. However, we have only a limited understanding of how the microarchitecture of porous scaffolds contributes to bone regeneration. Meta-biomaterials are increasingly used to precisely engineer the internal geometry of porous scaffolds and independently tailor their mechanical properties (e.g., stiffness and Poisson's ratio). This is motivated by the rare or unprecedented properties of meta-biomaterials, such as negative Poisson's ratios (i.e., auxeticity). It is, however, not clear how these unusual properties can modulate the interactions of meta-biomaterials with living cells and whether they can facilitate bone tissue engineering under static and dynamic cell culture and mechanical loading conditions. Here, we review the recent studies investigating the effects of the Poisson's ratio on the performance of meta-biomaterials with an emphasis on the relevant mechanobiological aspects. We also highlight the state-of-the-art additive manufacturing techniques employed to create meta-biomaterials, particularly at the micrometer scale. Finally, we provide future perspectives, particularly for the design of the next generation of meta-biomaterials featuring dynamic properties (e.g., those made through 4D printing). ...
Review (2022) - Ebrahim Yarali, Mahdi Baniasadi, Mohamad Ebrahimi, M. Mirzaali Mazandarani, Mahdi Bodaghi, Ali Zolfagharian, Maede Chavoshi, Fatemeh Arefi, Mokarram Hossain, Anil Bastola, Mahdi Ansari, Alireza Foyouzat, Ali Dabbagh
Magneto-/ electro-responsive polymers (MERPs) are a class of stimuli-responsive materials that are actuated when triggered by external magnetic/ electric fields. MERPs exhibit rapid, reversible, and safe multi-functional and dynamic (i.e., changing with time) properties, which can effectively be manipulated at different length scales. These features make MERPs very attractive particularly in biomedical engineering (e.g., drug delivery systems and tissue engineering), soft matter engineering (e.g., soft robotics), and structural design of smart materials with unprecedented properties (e.g., complex shape morphing). Due to the recent progress in the design and development of MERPs, here, we highlighted the current advances in fabricating MERPs using various manufacturing methods including 3D/ 4D printing and conventional techniques. We also summarized the methods used for the characterization of MERPs and discussed their important structure-property relationship. We also highlighted the potential applications of MERPs in biomedical engineering, soft robotic, and the design of smart materials and systems. MERPs show great potentials for creating smart materials with predictable dynamic properties. More studies are necessary to investigate the biological responses of MERP both in-vivo and in-vitro, which is essential for biomedical engineering applications. ...
Journal article (2021) - Ebrahim Yarali, Mohammad Ali Farajzadeh, Reza Noroozi, Ali Dabbagh, Mohammad J. Khoshgoftar, Mohammad J. Mirzaali
The authors regret to inform that unfortunately, there is a minor typo in the original version of the article. Authors apologize for this shortcoming and are aimed to report the correct data herein. In Table 1 of the original manuscript, a6 must be considered to be equal with +2.71 (instead of −2.71). The authors would like to apologise for any inconvenience caused. ...