This paper presents a mixed finite element framework for coupled hydro-mechanical–chemical processes in heterogeneous porous media. The framework combines two types of locally conservative discretization schemes: (1) an enriched Galerkin method for reactive flow, and (2) a three-field mixed finite element method for coupled fluid flow and solid deformation. This combination ensures local mass conservation, which is critical to flow and transport in heterogeneous porous media, with a relatively affordable computational cost. A particular class of the framework is constructed for calcite precipitation/dissolution reactions, incorporating their nonlinear effects on the fluid viscosity and solid deformation. Linearization schemes and algorithms for solving the nonlinear algebraic system are also presented. Through numerical examples of various complexity, we demonstrate that the proposed framework is a robust and efficient computational method for simulation of reactive flow and transport in deformable porous media, even when the material properties are strongly heterogeneous and anisotropic. ... Read more

This paper presents the enriched Galerkin discretization for modeling fluid flow in fractured porous media using the mixed-dimensional approach. The proposed method has been tested against published benchmarks. Since fracture and porous media discontinuities can significantly influence single- and multi-phase fluid flow, the heterogeneous and anisotropic matrix permeability setting is utilized to assess the enriched Galerkin performance in handling the discontinuity within the matrix domain and between the matrix and fracture domains. Our results illustrate that the enriched Galerkin method has the same advantages as the discontinuous Galerkin method; for example, it conserves local and global fluid mass, captures the pressure discontinuity, and provides the optimal error convergence rate. However, the enriched Galerkin method requires much fewer degrees of freedom than the discontinuous Galerkin method in its classical form. The pressure solutions produced by both methods are similar regardless of the conductive or non-conductive fractures or heterogeneity in matrix permeability. This analysis shows that the enriched Galerkin scheme reduces the computational costs while offering the same accuracy as the discontinuous Galerkin so that it can be applied for large-scale flow problems. Furthermore, the results of a time-dependent problem for a three-dimensional geometry reveal the value of correctly capturing the discontinuities as barriers or highly-conductive fractures. ... Read more

The use of adaptive lenses instead of deformable mirrors can simplify the implementation of an adaptive optics system. The recently introduced Multi-actuator Adaptive Lens (MAL) can be used in closed loop with a wavefront sensor to correct for time-variant wavefront aberrations. The MAL can guarantee a level of correction and a response time similar to the ones obtained with deformable mirrors. The adaptive lens is based on the use of piezoelectric actuators and, without any obstruction or electrodes in the clear aperture, can guarantee a fast response time, less than ∼10ms. Our tests show that the MAL can be used both in combination with a wavefront sensor in a "classical" adaptive optics closed loop, or in a wavefront sensorless configuration. The latter has allowed us to design more compact and simple imaging systems for different microscopy platforms. We will show that the Multi-actuator Adaptive Lens has been successfully used for in-vivo OCT ophthalmic imaging in both mice and humans, as well as confocal and two photon microscopy. We tested and compared different optimization strategies such as coordinate search and the DONE algorithm. The results suggest that the MAL optimization can correct for eye aberrations with a pupil of 5mm or sample induced aberrations in microscopy. ... Read more