J. Gebert
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46 records found
1
Organisms perpetually release genetic material in their surroundings, referred to as environmental DNA (eDNA), which can be captured and subsequently analyzed to detect biodiversity across the tree of life. In lotic, dynamic environments, little is known about the specific factors that affect the concentration of eDNA between release by the host and its dissemination into the environment. This gap in knowledge introduces significant uncertainty when applying eDNA as a monitoring tool. Our objective is to provide insight on the factors that affect the eDNA concentrations in ecosystems representative of rivers and streams. To this end, we conducted a series of laboratory experiments in a rotating circular (annular) flume, which allows for extended degradation experiments under conditions of flow. Here, we show that flow velocity impacts the observed eDNA concentration over time. Our results suggest that flow-induced transport keeps eDNA in suspension, reducing eDNA removal from the water column, which increased the observed concentration of eDNA. We observed a temporary increase in eDNA concentration over the early phase of the flume experiment with the highest flow velocity. This increase in eDNA concentration seems to be due to a combination of low eDNA degradation rates and high shear stress, which fragment and subsequently homogenize eDNA particles over the water column. The results of our study show the importance of better understanding and assessing the detection probability of eDNA, both in controlled laboratory and larger-scale environmental conditions.
Indeed, available OM was found to act as key driver regulating syntrophic microbial community composition and associated metabolic features, with location-specific overriding the effect of seasonal variations. Upstream sites with high available OM featuring lower bacterial but increased archaeal diversity and elevated methane and carbon dioxide fluxes, whereas lower OM lability downstream fostered a more diverse bacterial but decreased archaeal diversity. The ratio between microbial taxon richness and biomass correlated inversely with OM transformation rates. These patterns also reflected in increased EPS concentration produced in response to metabolic needs (i.e. polysaccharides and proteins), whereas structural components such as lipids, which can be more resistant under the prevailing anoxic conditions, remained more evenly distributed along the transect. Although bacterial relative abundances exceeded archaeal abundances (<1 %) by far, archaeal functional significance remained pivotal for the final release of carbon as methane and carbon dioxide under the mostly reducing conditions in the deposited sediment. ...
Indeed, available OM was found to act as key driver regulating syntrophic microbial community composition and associated metabolic features, with location-specific overriding the effect of seasonal variations. Upstream sites with high available OM featuring lower bacterial but increased archaeal diversity and elevated methane and carbon dioxide fluxes, whereas lower OM lability downstream fostered a more diverse bacterial but decreased archaeal diversity. The ratio between microbial taxon richness and biomass correlated inversely with OM transformation rates. These patterns also reflected in increased EPS concentration produced in response to metabolic needs (i.e. polysaccharides and proteins), whereas structural components such as lipids, which can be more resistant under the prevailing anoxic conditions, remained more evenly distributed along the transect. Although bacterial relative abundances exceeded archaeal abundances (<1 %) by far, archaeal functional significance remained pivotal for the final release of carbon as methane and carbon dioxide under the mostly reducing conditions in the deposited sediment.
Soil Formation from Dredged Sediment
Evolution of Biochemical and Physical Properties
Purpose: The share of microbially degradable sediment organic matter (SOM) and the degradation rate depend, among others, on the intrinsic properties of SOM as well as on the type and concentration of terminal electron acceptors (TEA). Next to its role as TEA, molecular oxygen enhances SOM decay by oxygenase-mediated breakdown of complex organic molecules. This research investigated long-term SOM decay (> 250 days) under aerobic and anaerobic conditions to (1) provide a basis for sediment carbon flux estimates from the River Elbe estuary and (2) assess the potential for carbon burial in relation to redox conditions and dredging interventions.
Methods: Long-term aerobic and anaerobic SOM decay in fluid mud, pre-consolidated and consolidated sediment layers was investigated over three years along a transect of ca. 20 km through the Port of Hamburg, starting at the first hydrodynamically determined hotspot of sedimentation after the weir in Geesthacht. Absolute differences between aerobic and anaerobic cumulative carbon mineralization were calculated, as well as their ratio. Findings were correlated to a suite of solids and pore water properties.
Results: SOM decay followed first order multi-phase exponential decay kinetics. The ratio between C release under aerobic and anaerobic conditions ranged around 4 in the short-term, converging to a value of 2 in the long term. Strong gradients in absolute C release along the upstream–downstream transect did not reflect in a corresponding gradient of the aerobic-anaerobic ratio. C release was most strongly correlated to the water-soluble organic matter, in particular humic acids. Contact of anaerobically stabilized sediment with the oxygenated water phase induced significant release of carbon.
Conclusion: SOM degradability in the study area exhibited strong spatial gradients in relation to the organic matter source gradient but was mainly limited by the high extent of organic matter stabilization. Under these conditions, molecular oxygen as TEA provides little thermodynamic advantage. Carbon-sensitive sediment management, considering SOM reactivity patterns in stratified depositional areas, is a powerful strategy to reduce environmental impacts of dredging measures.
Recirculation dredging is a port maintenance concept developed in the Port of Emden, Germany to create a navigable fluid mud layer. This study investigates the effects of recirculation on key sediment properties, including density, yield stress, and oxygen concentration.
Methods
Six field monitoring surveys were carried out at two locations at different times of the year to assess changes before and after recirculation. Bathymetry, bulk density, yield stress, and oxygen concentration profiles were measured in situ. The settling properties and oxygen concentration levels on collected fluid mud samples were analyzed in the laboratory.
Results
The investigation reveals minimal changes in the density of recirculated fluid mud. However, the post-recirculation measurements showed a decrease in yield stress, ranging from 18 to 51% at Große Seeschleuse (GS) and 36% to 52% at Industriehafen (IH). The yield stress and density vary depending on the frequency of dredging. After structural density (1166 kg m−3 in GS and 1173 kg m−3 in IH), the yield stress of fluid mud increased exponentially. Therefore, monitoring of the yield stress is important for recirculation. A slight increase in oxygen concentration was observed post-recirculation, especially during winter. Yet, the rapid decline in oxygen levels post-mixing in the laboratory showed that sustaining long-term elevated oxygenation levels is not feasible by recirculation dredging alone.
Conclusions
The findings highlight the effectiveness of the recirculation on the yield stress, density, and oxygen concentration of fluid mud and illustrate the importance of considering both density and yield stress in sediment management practices. Future research should address the temporal evolution of density, yield stress, and oxygen levels following a dredging intervention and the influence of extracellular polymeric substances (EPS) and organic matter decay on sediment behavior. ...
Recirculation dredging is a port maintenance concept developed in the Port of Emden, Germany to create a navigable fluid mud layer. This study investigates the effects of recirculation on key sediment properties, including density, yield stress, and oxygen concentration.
Methods
Six field monitoring surveys were carried out at two locations at different times of the year to assess changes before and after recirculation. Bathymetry, bulk density, yield stress, and oxygen concentration profiles were measured in situ. The settling properties and oxygen concentration levels on collected fluid mud samples were analyzed in the laboratory.
Results
The investigation reveals minimal changes in the density of recirculated fluid mud. However, the post-recirculation measurements showed a decrease in yield stress, ranging from 18 to 51% at Große Seeschleuse (GS) and 36% to 52% at Industriehafen (IH). The yield stress and density vary depending on the frequency of dredging. After structural density (1166 kg m−3 in GS and 1173 kg m−3 in IH), the yield stress of fluid mud increased exponentially. Therefore, monitoring of the yield stress is important for recirculation. A slight increase in oxygen concentration was observed post-recirculation, especially during winter. Yet, the rapid decline in oxygen levels post-mixing in the laboratory showed that sustaining long-term elevated oxygenation levels is not feasible by recirculation dredging alone.
Conclusions
The findings highlight the effectiveness of the recirculation on the yield stress, density, and oxygen concentration of fluid mud and illustrate the importance of considering both density and yield stress in sediment management practices. Future research should address the temporal evolution of density, yield stress, and oxygen levels following a dredging intervention and the influence of extracellular polymeric substances (EPS) and organic matter decay on sediment behavior.
due to competition with Ca2+, and the model better captures the dissolved NH4+ behavior when CaSO4 is present in solution. Mass removal due to sampling and posterior dilution are the main mechanisms to reduce NH4+ concentration in the leachate. The model highlights the role of nitrogen sorption as the main
mechanism for nitrogen accumulation in the solid phase of municipal solid waste. ...
due to competition with Ca2+, and the model better captures the dissolved NH4+ behavior when CaSO4 is present in solution. Mass removal due to sampling and posterior dilution are the main mechanisms to reduce NH4+ concentration in the leachate. The model highlights the role of nitrogen sorption as the main
mechanism for nitrogen accumulation in the solid phase of municipal solid waste.
decreasing share of carbon in the light density fractions. Thermometric pyrolysis revealed the highest H-index(easily degradable SOM) for the most upstream location and the ratio of the I-index (immature SOM) to the R-
index (refractory SOM) to correlate positively with measured SOM decay rates. This study suggests that spatial patterns of SOM degradability can be explained by a source gradient, with young organic matter entering the system from upstream from predominantly biogenic sources, while down-stream sources (North Sea sediment) deliver more refractory SOM that is stabilized in organo-mineral associations to a higher extent. In the investigated sediments, dissolved organic matter represented 0.23–1.20% of the total organic carbon (TOC) from anaerobically degradable SOM, while 4.10–11.46% TOC was liberated as CO2 and CH4 after long-term incubation (250 days). Thermometric pyrolysis is shown to serve as a useful proxy for SOM degradability in river sediments, with the Hydrogen-Index (HI) correlating well with degradability and the relationship between the I-index and R-index changing consistently towards lower I-indices and higher R-indices with an increasing degree of SOM stabilization.
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Degradability of organic matter in river sediments differs in relation to origin and age. In order to explain previously observed spatial patterns of organic matter degradability and stabilization, this study investigated sediment organic matter (SOM) properties along a tidal Elbe river transect using dissolved organic matter (DOM) fractions, density fractions, carbon stable isotopes and thermometric pyrolysis (Rock-Eval 6). These properties were linked to SOM decay rates and biological indicators such as chlorophyll a and silicic acid in the water phase, and sediment-bound extracellular polymeric substances (EPS), microbial biomass and oxygen consumption. Sediment source gradients were established using the concentration of Zn in the fraction < 20 μm as proxy. The specific Zn concentration showed that the most upstream location was nourished primarily by upstream fluviatile sediments while the other locations carried a downstream signature. The upstream location was also characterised by the highest concentrations of chlorophyll a, microbial biomass, silicic acid, EPS, humic acids and hydrophilic DOM, the most negative δ13C signature and by the highest oxygen consumption rate, with decreasing trends towards downstream locations. This trend was also evident in the decreasing SOM lability from upstream to downstream, an increasing share of total SOM found in the acid-base-extractable fractions and a
decreasing share of carbon in the light density fractions. Thermometric pyrolysis revealed the highest H-index(easily degradable SOM) for the most upstream location and the ratio of the I-index (immature SOM) to the R-
index (refractory SOM) to correlate positively with measured SOM decay rates. This study suggests that spatial patterns of SOM degradability can be explained by a source gradient, with young organic matter entering the system from upstream from predominantly biogenic sources, while down-stream sources (North Sea sediment) deliver more refractory SOM that is stabilized in organo-mineral associations to a higher extent. In the investigated sediments, dissolved organic matter represented 0.23–1.20% of the total organic carbon (TOC) from anaerobically degradable SOM, while 4.10–11.46% TOC was liberated as CO2 and CH4 after long-term incubation (250 days). Thermometric pyrolysis is shown to serve as a useful proxy for SOM degradability in river sediments, with the Hydrogen-Index (HI) correlating well with degradability and the relationship between the I-index and R-index changing consistently towards lower I-indices and higher R-indices with an increasing degree of SOM stabilization.