R. Dekker
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31 records found
1
Pre-Charged Collapse-Mode CMUTs
A building block for future ultrasound
This thesis focuses on pre-charged collapse-mode CMUTs, which operate without a DC bias voltage, making them suitable for in-body applications. This is achieved by embedding a charge storage layer in their dielectric. The research involved designing and testing a first and second generation of CMUTs with different charge storage layers. The second generation showed improved performance and comparable results to standard externally biased CMUTs.
The primary application explored was using pre-charged CMUTs as ultrasonic power receivers for implantable devices. The impact of lateral and angular misalignment on power efficiency was studied, with angular misalignment being most detrimental. Solutions proposed included decreasing the frequency, partitioning the receiving transducer, and using a beamforming algorithm.
Experimental evaluations showed power conversion efficiencies up to 80% with optimal load and about 50% with a resistive load at 2.5 MHz. These efficiencies are comparable to those achieved with PZT transducers but with better biocompatibility.
Finally, the thesis demonstrated the functionality of the first ultrasonically powered implantable device using pre-charged CMUTs for battery charging. The device achieved a total system efficiency of 21%, significantly better than other implantable devices using PMUT or PZT transducers.
...
This thesis focuses on pre-charged collapse-mode CMUTs, which operate without a DC bias voltage, making them suitable for in-body applications. This is achieved by embedding a charge storage layer in their dielectric. The research involved designing and testing a first and second generation of CMUTs with different charge storage layers. The second generation showed improved performance and comparable results to standard externally biased CMUTs.
The primary application explored was using pre-charged CMUTs as ultrasonic power receivers for implantable devices. The impact of lateral and angular misalignment on power efficiency was studied, with angular misalignment being most detrimental. Solutions proposed included decreasing the frequency, partitioning the receiving transducer, and using a beamforming algorithm.
Experimental evaluations showed power conversion efficiencies up to 80% with optimal load and about 50% with a resistive load at 2.5 MHz. These efficiencies are comparable to those achieved with PZT transducers but with better biocompatibility.
Finally, the thesis demonstrated the functionality of the first ultrasonically powered implantable device using pre-charged CMUTs for battery charging. The device achieved a total system efficiency of 21%, significantly better than other implantable devices using PMUT or PZT transducers.
Electrical Impedance Measurements in the Gastrointestinal Tract
Cancerous or Non-Cancerous?
leum, and two colon. Forty-eight ex vivo measurements are taken; 32 are on healthy tissue and 16 on cancerous tissue. Almost all measurements are verified by histological assessment (golden standard). In this work, a combination of parameterization with a classification method is made to create a classification strategy. These can be listed as the Cole impedance model, the two-pole Cole impedance model, the two-pole Cole impedance model in combination with a
Constant Phase Element (CPE), and PCA. The Cole impedance models are combined with thresholding, and the PCA is combined with a SVM. Results: The thresholding algorithm is created in combination with the α2 parameter (P < 0.05) from the two-pole Cole impedance model in combination with a CPE. The thresholding value is determined in a LOOCV approach via ROC curves created to search for the threshold that gives the most significant summation of sensitivity and specificity. In the combination of PCA and SVM, the PCA uses three principal components (containing 96.37% of the total variance), and the SVM applies an Radial Basis Function (RBF) kernel. For the 2-pole Cole impedance model with CPE
in combination with thresholding, we find an accuracy 0.5208, sensitivity 0.4375, specificity 0.5625, Positive Predictive Value (PPV) 0.3333, Negative Predictive Value (NPV) 0.6666, and Mathews Correlation Coefficient (MCC) 0.0000. For the PCA in combination with the SVM, we find an accuracy of 0.4167, a sensitivity of 0.0000, specificity of 0.6250, PPV of 0.0000, NPV of 0.5556, and MCC -0.4082. Conclusion: It is concluded that we cannot create an algorithm that either supports surgeons or replaces a biopsy in the GI tract with the current setup. This is highly likely due to the extremely low amount of data that is included to train
the algorithm. ...
leum, and two colon. Forty-eight ex vivo measurements are taken; 32 are on healthy tissue and 16 on cancerous tissue. Almost all measurements are verified by histological assessment (golden standard). In this work, a combination of parameterization with a classification method is made to create a classification strategy. These can be listed as the Cole impedance model, the two-pole Cole impedance model, the two-pole Cole impedance model in combination with a
Constant Phase Element (CPE), and PCA. The Cole impedance models are combined with thresholding, and the PCA is combined with a SVM. Results: The thresholding algorithm is created in combination with the α2 parameter (P < 0.05) from the two-pole Cole impedance model in combination with a CPE. The thresholding value is determined in a LOOCV approach via ROC curves created to search for the threshold that gives the most significant summation of sensitivity and specificity. In the combination of PCA and SVM, the PCA uses three principal components (containing 96.37% of the total variance), and the SVM applies an Radial Basis Function (RBF) kernel. For the 2-pole Cole impedance model with CPE
in combination with thresholding, we find an accuracy 0.5208, sensitivity 0.4375, specificity 0.5625, Positive Predictive Value (PPV) 0.3333, Negative Predictive Value (NPV) 0.6666, and Mathews Correlation Coefficient (MCC) 0.0000. For the PCA in combination with the SVM, we find an accuracy of 0.4167, a sensitivity of 0.0000, specificity of 0.6250, PPV of 0.0000, NPV of 0.5556, and MCC -0.4082. Conclusion: It is concluded that we cannot create an algorithm that either supports surgeons or replaces a biopsy in the GI tract with the current setup. This is highly likely due to the extremely low amount of data that is included to train
the algorithm.
Acoustic Materials for Wearable Ultrasound patches
Developing an ultrasound skin mimicking phantom
Development of a microfluidic system for modelling the heart-kidney interaction in vitro
Design guidelines and proof-of-concept
This project set out to design, develop and validate a microfluidic set-up, which would then enable the investigation of CRS in a three-dimensional environment. To that end, a theoretical framework covering all aspects related to Multi-Organ-On-Chip (MOoC) design was developed. This framework then formed the foundation for an extensive list of requirements to establish an ideal microfluidic set-up for a heart-kidney disease model. Various conceptual circuit designs were proposed and evaluated on the basis of the set requirements and their associated priority.
By executing feasibility studies, simulating computational fluid dynamics, designing specific organoid inserts and eventually setting-up the proposed microfluidic circuits, a better understanding of the technological and biological challenges to be addressed was obtained. Proof-of-principle experiments were promising, but more experimental iterations with a focus on in-depth biological tissue characterization are required to further evolve and fully validate the
proposed cardiorenal model. Pressing issues entail establishing physiologically relevant scaling ratios, reducing required medium volume and identifying the exact disease models to incorporate once the physiological organoid system is functional and has been validated. ...
This project set out to design, develop and validate a microfluidic set-up, which would then enable the investigation of CRS in a three-dimensional environment. To that end, a theoretical framework covering all aspects related to Multi-Organ-On-Chip (MOoC) design was developed. This framework then formed the foundation for an extensive list of requirements to establish an ideal microfluidic set-up for a heart-kidney disease model. Various conceptual circuit designs were proposed and evaluated on the basis of the set requirements and their associated priority.
By executing feasibility studies, simulating computational fluid dynamics, designing specific organoid inserts and eventually setting-up the proposed microfluidic circuits, a better understanding of the technological and biological challenges to be addressed was obtained. Proof-of-principle experiments were promising, but more experimental iterations with a focus on in-depth biological tissue characterization are required to further evolve and fully validate the
proposed cardiorenal model. Pressing issues entail establishing physiologically relevant scaling ratios, reducing required medium volume and identifying the exact disease models to incorporate once the physiological organoid system is functional and has been validated.
Characteristics of BioMEMS thin-film polymers
A study towards the biocompatibility
The problem at the moment is the lack of information needed to compare polymers with each other in order to identify their characteristics and properties. These characteristics are particularly important for the biocompatibility of the BioMEMS. Therefore, the optical characteristics, surface characteristics, adhesion etching, and cytotoxicity are investigated. For the optical characteristics, the polymers were examined for fluorescence and transmission of light. For the surface characteristics, hermeticity (non-permeable) and wettability (hydrophilic or hydrophobic surfaces) were examined. Furthermore, adhesion and etching were studied for their (chemical) resistance. Finally, the polymers were examined for their toxicity to cells (cytotoxic).
Through these tests, more information about the polymers and their characteristics has been obtained through these tests.
The results of these different tests cannot be combined into a single polymer showing the best results from all tests. The fluorescence test showed that the layers of the final device are important as they can be responsible for different intensities of fluorescence. Furthermore, it was found that perminex is the most hydrophilic but may fracture in saline solution.
It was noteworthy that the polymers, which are already widely used in BioMEMS applications (SU-8 and parylene-C), appeared to be the only ones to exhibit negative effects on cells (toxicity and cell growth inhibition). The other polymers tended to do significantly better there. Even though a number of properties that are important for biocompatibility were evaluated here, to ensure that the polymers and BioMEMS devices are fully compliant, testing will be required to meet the ISO standard 10993. ...
The problem at the moment is the lack of information needed to compare polymers with each other in order to identify their characteristics and properties. These characteristics are particularly important for the biocompatibility of the BioMEMS. Therefore, the optical characteristics, surface characteristics, adhesion etching, and cytotoxicity are investigated. For the optical characteristics, the polymers were examined for fluorescence and transmission of light. For the surface characteristics, hermeticity (non-permeable) and wettability (hydrophilic or hydrophobic surfaces) were examined. Furthermore, adhesion and etching were studied for their (chemical) resistance. Finally, the polymers were examined for their toxicity to cells (cytotoxic).
Through these tests, more information about the polymers and their characteristics has been obtained through these tests.
The results of these different tests cannot be combined into a single polymer showing the best results from all tests. The fluorescence test showed that the layers of the final device are important as they can be responsible for different intensities of fluorescence. Furthermore, it was found that perminex is the most hydrophilic but may fracture in saline solution.
It was noteworthy that the polymers, which are already widely used in BioMEMS applications (SU-8 and parylene-C), appeared to be the only ones to exhibit negative effects on cells (toxicity and cell growth inhibition). The other polymers tended to do significantly better there. Even though a number of properties that are important for biocompatibility were evaluated here, to ensure that the polymers and BioMEMS devices are fully compliant, testing will be required to meet the ISO standard 10993.
Cardiovascular diseases are a leading cause of death worldwide, which calls for an ideal in-vitro screening model for cardiotoxicity. The MUSbit™ device, an OoC developed by Bi/ond, incorporates a 3D muscle microtissue anchored to two pillars designed to align the tissue. The device consists of a microfluidic channel to offer the necessary perfusion to mimic the blood flow through the heart. Bi/ond aims to electrically pace the cardiovascular bundle via the two pillars and record the electrical activity of the cardiac cells. This is achieved by combining an electrode and the pillar. Thus, a 3D electrode in integrated into the platform. Compared to 2-D microelectrode arrays (MEAs), 3D electrodes have a larger surface area, lowering the electrode impedance and increasing the signal-to-noise ratio (SNR).
The existing method of Bi/ond incorporates the electrode underneath the pillar via a cavity ( also known as the basement) in silicon fabricated using Deep Reactive Ion Etching (DRIE). This thesis focused on combining the electrode underneath the pillar by optimizing the critical steps in the fabrication process. The basement provides a form of adhesion for the pillars towards the later stages of the process. Due to the limitations concerning the step coverage of the different layers deposited over the current profile of the cavity, the design was modified. In this project, two main goals were defined and achieved. Firstly, the basement design was optimized by wet etching the silicon using potassium hydroxide (KOH) to obtain a cavity with a slanted sidewall. The photolithography on the layers and the step coverage of the deposited layers on the cavity were investigated. Experiments were performed to observe the effect of the modified basement design on the pillars (without the electrode). Secondly, the feasibility of integrating the electrode underneath the pillar without a basement was assessed. The photomask of the essential layers (except the metal) was designed accordingly. Finally, the influence of the alternative designs on the pillars was tested to verify their viability. Both approaches showed that it is practical to implement the techniques which can be compatible with the process of Bi/ond. The several microfabrication tests presented in this work set a foundation to incorporate the electrodes into the platform, making ground for future studies.
...
Cardiovascular diseases are a leading cause of death worldwide, which calls for an ideal in-vitro screening model for cardiotoxicity. The MUSbit™ device, an OoC developed by Bi/ond, incorporates a 3D muscle microtissue anchored to two pillars designed to align the tissue. The device consists of a microfluidic channel to offer the necessary perfusion to mimic the blood flow through the heart. Bi/ond aims to electrically pace the cardiovascular bundle via the two pillars and record the electrical activity of the cardiac cells. This is achieved by combining an electrode and the pillar. Thus, a 3D electrode in integrated into the platform. Compared to 2-D microelectrode arrays (MEAs), 3D electrodes have a larger surface area, lowering the electrode impedance and increasing the signal-to-noise ratio (SNR).
The existing method of Bi/ond incorporates the electrode underneath the pillar via a cavity ( also known as the basement) in silicon fabricated using Deep Reactive Ion Etching (DRIE). This thesis focused on combining the electrode underneath the pillar by optimizing the critical steps in the fabrication process. The basement provides a form of adhesion for the pillars towards the later stages of the process. Due to the limitations concerning the step coverage of the different layers deposited over the current profile of the cavity, the design was modified. In this project, two main goals were defined and achieved. Firstly, the basement design was optimized by wet etching the silicon using potassium hydroxide (KOH) to obtain a cavity with a slanted sidewall. The photolithography on the layers and the step coverage of the deposited layers on the cavity were investigated. Experiments were performed to observe the effect of the modified basement design on the pillars (without the electrode). Secondly, the feasibility of integrating the electrode underneath the pillar without a basement was assessed. The photomask of the essential layers (except the metal) was designed accordingly. Finally, the influence of the alternative designs on the pillars was tested to verify their viability. Both approaches showed that it is practical to implement the techniques which can be compatible with the process of Bi/ond. The several microfabrication tests presented in this work set a foundation to incorporate the electrodes into the platform, making ground for future studies.
Wearable Ultrasound for Respiratory Monitoring in the Intensive Care Unit
The design of a placing system for ultrasound patches
Current developments in ultrasound technology are resulting in smaller, cheaper and higher quality ultrasound devices. Micro-electro-mechanical (MEMS) ultrasound also allows for wearable solutions, such as patches attached to the skin. Besides, ultrasound does not use ionizing radiation and is therefore safer to use than CT.
Since ultrasound patches are already in development for other applications, for instance hemodynamic and bladder monitoring, the possibility of using it for respiratory monitoring for mechanically ventilated patients is investigated. In this report, the possibilities of using ultrasound patches for continuous respiratory monitoring for mechanically ventilated patients are explored. The focus points are usability and workflow design.
The design of a placing system is proposed, which allows the user to properly place the patches on the right location. This system is based on using an existing ultrasound transducer, in this case the Philips Lumify L12-4, to generate a full image. Then, the patch can be placed. This system allows for the use of both imaging and non-imaging patches. The electronics are reusable. The other parts can be adapted for the use with different transducers and applications, beyond respiratory monitoring.
...
Current developments in ultrasound technology are resulting in smaller, cheaper and higher quality ultrasound devices. Micro-electro-mechanical (MEMS) ultrasound also allows for wearable solutions, such as patches attached to the skin. Besides, ultrasound does not use ionizing radiation and is therefore safer to use than CT.
Since ultrasound patches are already in development for other applications, for instance hemodynamic and bladder monitoring, the possibility of using it for respiratory monitoring for mechanically ventilated patients is investigated. In this report, the possibilities of using ultrasound patches for continuous respiratory monitoring for mechanically ventilated patients are explored. The focus points are usability and workflow design.
The design of a placing system is proposed, which allows the user to properly place the patches on the right location. This system is based on using an existing ultrasound transducer, in this case the Philips Lumify L12-4, to generate a full image. Then, the patch can be placed. This system allows for the use of both imaging and non-imaging patches. The electronics are reusable. The other parts can be adapted for the use with different transducers and applications, beyond respiratory monitoring.
An attractive alternative to PZT in acoustic sorting devices that has yet to be researched, are the capacitive Micromachined Ultrasonic Transducers (CMUT). CMUTs are well-known for their broad bandwidth, batch production and the possibility for complex designs and integration with electronic circuits.
In this work, we present proof-of-concept devices to examine that CMUTs can be used as an acoustic source for particle sorting. Two different acoustic-microfluidic device interfaces were considered, namely the sidewall and the top area of the CMUT. Additionally, the presence of an acoustic pressure within the silicon substrate of the CMUT's die was investigated.
Experiments show that CMUTs generate an acoustic pressure within the silicon substrate of the CMUT's die. This acoustic pressure increased 6.4 times when a phase alignment approach was used compared to when no phase alignment approach was used. Following these findings, acoustic-based sorting devices were assembled to perform particle alignment experiments. It was shown that continuous particle sorting could be demonstrated efficiently for both interfaces by using a pressure field based on standing waves. Additionally, structures integrated into the microfluidic devices, such as a vacuum horn, have the potential to amplify the acoustic signal. These findings indicate that CMUT-based microfluidic devices could provide a promising method for sheathless particle sorting. ...
An attractive alternative to PZT in acoustic sorting devices that has yet to be researched, are the capacitive Micromachined Ultrasonic Transducers (CMUT). CMUTs are well-known for their broad bandwidth, batch production and the possibility for complex designs and integration with electronic circuits.
In this work, we present proof-of-concept devices to examine that CMUTs can be used as an acoustic source for particle sorting. Two different acoustic-microfluidic device interfaces were considered, namely the sidewall and the top area of the CMUT. Additionally, the presence of an acoustic pressure within the silicon substrate of the CMUT's die was investigated.
Experiments show that CMUTs generate an acoustic pressure within the silicon substrate of the CMUT's die. This acoustic pressure increased 6.4 times when a phase alignment approach was used compared to when no phase alignment approach was used. Following these findings, acoustic-based sorting devices were assembled to perform particle alignment experiments. It was shown that continuous particle sorting could be demonstrated efficiently for both interfaces by using a pressure field based on standing waves. Additionally, structures integrated into the microfluidic devices, such as a vacuum horn, have the potential to amplify the acoustic signal. These findings indicate that CMUT-based microfluidic devices could provide a promising method for sheathless particle sorting.
In this work, a simple low power uplink data telemetry circuit to establish the 'first contact' that sends information on the implant's energy status to the transmitter is designed. The telemetry uses load impedance modulation to passively transmit back information. This principle is tested using an experimental setup with a 4 MHz burst frequency and different resistive loads varied from 0 Ω to 2000 Ω. Next, an algorithm was developed that automatically finds the optimal focus and steering angle settings so that the maximum amount of power is transferred to the ultrasound energy scavenger. This algorithm works based on the information sent from the uplink data telemetry circuit.
The results show that load impedance modulation can effectively be used for backscatter communication. A reflected energy change of up to 40% is observed between matched and mismatched load conditions. This load modulation was implemented in the uplink data telemetry circuit. A simple low power circuit that consumes less than 0.5 μW was designed for this. The uplink telemetry protocol uses pulse width modulation to send the storage capacitor voltage which powers the implant, and an almost linear correlation was found between the pulse width and the supply voltage. The algorithm produces a heat plot showing the maximum power transferred at the location where CMUT was placed and gives the optimal value of focus and steering angle.
...
In this work, a simple low power uplink data telemetry circuit to establish the 'first contact' that sends information on the implant's energy status to the transmitter is designed. The telemetry uses load impedance modulation to passively transmit back information. This principle is tested using an experimental setup with a 4 MHz burst frequency and different resistive loads varied from 0 Ω to 2000 Ω. Next, an algorithm was developed that automatically finds the optimal focus and steering angle settings so that the maximum amount of power is transferred to the ultrasound energy scavenger. This algorithm works based on the information sent from the uplink data telemetry circuit.
The results show that load impedance modulation can effectively be used for backscatter communication. A reflected energy change of up to 40% is observed between matched and mismatched load conditions. This load modulation was implemented in the uplink data telemetry circuit. A simple low power circuit that consumes less than 0.5 μW was designed for this. The uplink telemetry protocol uses pulse width modulation to send the storage capacitor voltage which powers the implant, and an almost linear correlation was found between the pulse width and the supply voltage. The algorithm produces a heat plot showing the maximum power transferred at the location where CMUT was placed and gives the optimal value of focus and steering angle.
3D Robotic Ultrasound System
A 3D Volumetric Ultrasound Imaging System using a CMUT Phased Array and a Robotic Arm
The microfluidic OOC platform, inCHIPitTM, by BIOND Solutions, B.V. is a versatile tool designed for co-culture with a variety of macroscopic tissue types, such as organoids, explants, spheroids, and microtissues. It is a silicone (a.k.a. PDMS) and silicon-based platform that has the capacity for pneumatically controlled flexions and monitoring bioelectrical potentials. The inCHIPitTM model has already be implemented to model various organs, including midbrain organoids and induced pluripotent stem cells (iPSCs). The purpose of this study, however, is to further characterize the laboratory tool itself rather than the potential biological applications. Here, optical coherence tomography (OCT) is used to interrogate the OOC device’s construction and culture capability by making use of properties of interfering waves and backscattering light. Furthermore, the microfluidic fluid flows and diffusion events in an OOC were characterized with OCT for the first time. And, as proof of concept, organoid-like bodies (OLBs) and their impact on flows in culture were examined.
inCHIPitTM consists of two microcompartments – a straight microfluidic channel and a culture well separated by a microporous PDMS membrane – which are supported by a series of interlocking plates and a culture lid, all composed of different materials. In terms of imaging quality, the plate material choice and lid optical traits played a key role by limiting background noise, yet, for instance, the culture lid qualities would prove inhibiting to OCT measurements during actual cell culture experiments. Moreover, the fluid velocity profiles within in inCHIPitTM microfluidics were observed and were demonstrated to exhibit characteristic velocity profiles. It was also shown that mass transport phenomenon across the porous membrane in the cell culture well occur and follow typical diffusive mechanisms. Further, initial observations as to the effects of OLBs on fluid flow characteristics in the inCHIPitTM platform were reported. The compilation of OCT and OLB measurements and observations make a strong argument for the potential of inCHIPitTM system as a staple of biomedical applications. ...
The microfluidic OOC platform, inCHIPitTM, by BIOND Solutions, B.V. is a versatile tool designed for co-culture with a variety of macroscopic tissue types, such as organoids, explants, spheroids, and microtissues. It is a silicone (a.k.a. PDMS) and silicon-based platform that has the capacity for pneumatically controlled flexions and monitoring bioelectrical potentials. The inCHIPitTM model has already be implemented to model various organs, including midbrain organoids and induced pluripotent stem cells (iPSCs). The purpose of this study, however, is to further characterize the laboratory tool itself rather than the potential biological applications. Here, optical coherence tomography (OCT) is used to interrogate the OOC device’s construction and culture capability by making use of properties of interfering waves and backscattering light. Furthermore, the microfluidic fluid flows and diffusion events in an OOC were characterized with OCT for the first time. And, as proof of concept, organoid-like bodies (OLBs) and their impact on flows in culture were examined.
inCHIPitTM consists of two microcompartments – a straight microfluidic channel and a culture well separated by a microporous PDMS membrane – which are supported by a series of interlocking plates and a culture lid, all composed of different materials. In terms of imaging quality, the plate material choice and lid optical traits played a key role by limiting background noise, yet, for instance, the culture lid qualities would prove inhibiting to OCT measurements during actual cell culture experiments. Moreover, the fluid velocity profiles within in inCHIPitTM microfluidics were observed and were demonstrated to exhibit characteristic velocity profiles. It was also shown that mass transport phenomenon across the porous membrane in the cell culture well occur and follow typical diffusive mechanisms. Further, initial observations as to the effects of OLBs on fluid flow characteristics in the inCHIPitTM platform were reported. The compilation of OCT and OLB measurements and observations make a strong argument for the potential of inCHIPitTM system as a staple of biomedical applications.
Cardiac mapping on ex vivo perfused porcine slaughterhouse hearts
A Langendorff perfusion protocol for epicardial mapping on isolated beating hearts
Based on these results, it is clear that ultrasound, specifically using implantable CMUT devices, has a great potential to be used in bioelectronic medicine applications for both the treatment of neurological disorders as well as a means of power transfer. ...
Based on these results, it is clear that ultrasound, specifically using implantable CMUT devices, has a great potential to be used in bioelectronic medicine applications for both the treatment of neurological disorders as well as a means of power transfer.
Noninvasive Hemodynamic Monitoring
Left Ventricular Pressure-Volume Loop Reconstruction