Processing graphs on a large scale presents a range of difficulties, including irregular memory access patterns, device memory limitations, and the need for effective partitioning in distributed systems, all of which can lead to performance problems on traditional architectures such as CPUs and GPUs. To address these challenges, recent research emphasizes the use of Field-Programmable Gate Arrays (FPGAs) within distributed frameworks, harnessing the power of FPGAs in a distributed environment for accelerated graph processing. This paper examines the effectiveness of a multi-FPGA distributed architecture in combination with a partitioning system to improve data locality and reduce inter-partition communication. Utilizing Hadoop at a higher level, the framework maps the graph to the hardware, efficiently distributing pre-processed data to FPGAs. The FPGA processing engine, integrated into a cluster framework, optimizes data transfers, using offline partitioning for large-scale graph distribution. A first evaluation of the framework is based on the popular PageRank algorithm, which assigns a value to each node in a graph based on its importance. In the realm of large-scale graphs, the single FPGA solution outperformed the GPU solution that were restricted by memory capacity and surpassing CPU speedup by 26x compared to 12x. Moreover, when a single FPGA device was limited due to the size of the graph, our performance model showed that a distributed system with multiple FPGAs could increase performance by around 12x. This highlights the effectiveness of our solution for handling large datasets that surpass on-chip memory restrictions.

DNA read alignment is an integral part of genome study, which has been revolutionised thanks to the growth of Next Generation Sequencing (NGS) technologies. The inherent computational intensity of string matching algorithms such as Smith-Waterman (SmW) and the vast amount of NGS input data, create a bottleneck in the workflows. Accelerated reconfigurable computing has been extensively leveraged to alleviate this bottleneck, focusing on high-performance albeit standalone implementations. In existing accelerated solutions effective co-design of NGS short-read alignment still remains an open issue, mainly due to narrow view on real integration aspects, such as system wide communication and accelerator call overheads. In this paper, we first propose GANDAFL, a novel Genome AligNment DAta-FLow architecture for SmW Matrix-fill and Traceback stages to perform high throughput short-read alignment on NGS data. We then propose a radical software restructuring to widely-used Bowtie2 aligner that allows read alignment by batches to expose acceleration capabilities. Batch alignment minimizes calling overhead of the accelerators whereas moving both Matrix-fill and Traceback on chip extinguishes the communication data overheads. The standalone solution delivers up to ×116 and ×2 speedup over state-of-the-art software and hardware accelerators respectively and GANDAFL-enhanced Bowtie2 aligner delivers a ×1.9 speedup.

Executing complex scientific applications on Coarse-Grain Reconfigurable Arrays (CGRAs) promises improvements in execution time and/or energy consumption compared to optimized software implementations or even fully customized hardware solutions. Typical CGRA architectures contain of multiple instances of the same compute module that consist of simple and general hardware units such as ALUs, simple processors. However, generality in the cell contents, while convenient for serving a wide variety of applications, penalizes performance and energy efficiency. To that end, a few proposed CGRAs use custom logic tailored to a particular application's specific characteristics in the compute module. This approach, while much more efficient, restricts the versatility of the array. To date, versatility at hardware speeds is only supported with Field programmable gate arrays (FPGAs), that are reconfigurable at a very fine grain. This work proposes MC-DeF, a novel Mixed-CGRA Definition Framework targeting a Mixed-CGRA architecture that leverages the advantages of CGRAs by utilizing a customized cell array, and those of FPGAs by incorporating a separate LUT array used for adaptability. The framework presented aims to develop a complete CGRA architecture. First, a cell structure and functionality definition phase creates highly customized application/domain specific CGRA cells. Then, mapping and routing phases define the CGRA connectivity and cell-LUT array transactions. Finally, an energy and area estimation phase presents the user with area occupancy and energy consumption estimations of the final design. MC-DeF uses novel algorithms and cost functions driven by user defined metrics, threshold values, and area/energy restrictions. The benefits of our framework, besides creating fast and efficient CGRA designs, include design space exploration capabilities offered to the user. The validity of the presented framework is demonstrated by evaluating and creating CGRA designs of nine applications. Additionally, we provide comparisons of MC-DeF with state-of-the-art related works, and show that MC-DeF offers competitive performance (in terms of internal bandwidth and processing throughput) even compared against much larger designs, and requires fewer physical resources to achieve this level of performance. Finally, MC-DeF is able to better utilize the underlying FPGA fabric and achieves the best efficiency (measured in LUT/GOPs).

Even though FPGAs are becoming more and more popular as they are used in many different scenarios like communications and HPC, the steep learning curve needed to work with this technology is still the major limiting factor to their full success. Many works proposed to mitigate this problem by creating a companion of tools to support the designer during the development phase for this technology. The EU FASTER Project aims at realizing an integrated toolchain that assists the designer in the steps of the design flow that are necessary to port a given application onto an FPGA device. The novelty of the framework relies in the fact that the partial dynamic reconfiguration, which FPGA devices can exploit, is seen as a first class citizen throughout the whole design flow. This work reports a case study in which the FASTER toolchain has been used to port a raytracer application onto the STM Spear prototyping embedded platform. The paper discusses the steps done for the realization of the prototype and the results obtained on the target device. It finally reports some improvements that can be exploited to improve the performance of the hardware implementation that has been realized.

Short and efficient memory tests is the goal of every test designer. To reduce the cost of production tests, often a simple test which covers most of the faults, e.g. all simple (unlinked) faults, is desirable to eliminate most defective parts; a more costly test can be used thereafter to eliminate the remainder of the bad parts. Such a test-cost efficient approach is used by most manufacturers. In addition, system power-on tests are not allowed a long test time while a high fault coverage is desirable. The authors propose a new realistic fault model (the disturb fault model), and a set of tests for unlinked faults. These tests have the property of covering all simple (unlinked) faults at a very reasonable test time compared with existing tests.

Many march tests have already been designed to cover faults of different fault models. The complexity of these tests arises when linked faults are taken into consideration. This paper gives an overview of the most important and commonly used fault models, including the industry's popular disturb fault model. The fault coverage of march tests is analysed in a novel way, i.e., in terms of their detection capabilities for: simple faults, and linked faults; whereby the infinite class of linked faults has been reduced to a set of realistic linked faults. Thereafter, the paper presents a methodology to design tests for realistic linked faults, resulting in the new tests March LR, March LRD and March LRDD. These new tests will be shown to be more efficient and to offer a higher fault coverage than comparable existing tests.