RW

R. Waasdorp

info

Please Note

9 records found

Journal article (2026) - Raphael Panskus, Andrada Iulia Velea, Lukas Holzapfel, Christos Pavlou, Flora Nelissen, Rick Waasdorp, David Maresca, Valeria Gazzola, Vasiliki Giagka, More authors...
Neural interfaces that unify diagnostic and therapeutic functionalities hold particular promise for advancing both fundamental neuroscience and clinical neurotechnology. Functional ultrasound imaging (fUSI) has recently emerged as a powerful modality for high-resolution, non-invasive monitoring of brain function and structure. However, conventional metal-based microelectrodes typically impede ultrasound propagation, limiting compatibility with fUSI. Here, we present flexible, ultrasound-transparent neural interfaces that retain practical metal thicknesses while achieving high acoustic transparency. We introduce a theoretical and simulation-based framework to investigate the conditions under which commonly used polymers and metals in neural interfaces can become acoustically transparent. Based on these insights, we propose design guidelines that maximise ultrasound transmission through soft neural interfaces. We experimentally validate our approach through immersion experiments and by demonstrating the acoustic transparency of a suitably engineered interface using fUSI in phantom and in vivo experiments. Finally, we discuss the potential extension of this approach to therapeutic focused ultrasound (FUS). This work establishes a foundation for the development of multimodal neural interfaces with enhanced diagnostic and therapeutic capabilities, enabling both scientific discovery and translational impact. ...
Advances in 4D ultrasound imaging open new perspectives in biomedical research by reducing the long-standing challenge of operator dependency. Extensive research efforts are focused on developing next generation of 2D transducer arrays for 4D imaging. Here, we present a compact 2D array design based on hexagonal-shaped transducer elements. We demonstrate that 2D hexagonal arrays provide an optimal compact sampling, resulting in lower grating lobe levels and an improved imaging quality compared to conventional square-shaped transducer element arrays. A prototype array made of hexagonal transducer elements is presented, and its characterization is provided, demonstrating its imaging capabilities. ...

Imaging opaque organs at the capillary and cellular scale

Journal article (2025) - Baptiste Heiles, Flora Nelissen, Mikhail G. Shapiro, Valeria Gazzola, David Maresca, Rick Waasdorp, Dion Terwiel, Byung Min Park, Eleonora Munoz Ibarra, Agisilaos Matalliotakis, Tarannum Ara, Pierina Barturen-Larrea, Mengtong Duan
Light-sheet fluorescence microscopy has revolutionized biology by visualizing dynamic cellular processes in three dimensions. However, light scattering in thick tissue and photobleaching of fluorescent reporters limit this method to studying thin or translucent specimens. In this study, we applied nondiffractive ultrasound beams in conjunction with a cross-amplitude modulation sequence and nonlinear acoustic reporters to enable fast and volumetric imaging of targeted biological functions. We reported volumetric imaging of tumor gene expression at the cubic centimeter scale using genetically encoded gas vesicles and localization microscopy of cerebral capillary networks using intravascular microbubble contrast agents. Nonlinear sound-sheet microscopy provides a ~64× acceleration in imaging speed, ~35× increase in imaged volume, and ~4× increase in classical imaging resolution compared with the state of the art in biomolecular ultrasound. ...
Doctoral thesis (2025) - R. Waasdorp, N. de Jong, D. Maresca, G.G.J. Renaud
Ultrasound imaging is a widespread clinical tool, known best for prenatal examinations of developing human embryos. Recently, a technological breakthrough has revolutionized the field of ultrasound imaging by enabling imaging at thousands of frames per second. This increase in temporal resolution has opened the door to many new applications, such as monitoring the subtle motion of heart walls, measuring electromechanical waves in muscles and detecting the stiffness of organs. Furthermore, the fast frame rates have significantly improved ultrasound sensitivity to small vessels and enables monitoring of local changes in blood flow. This has let to the development of functional ultrasound imaging (fUS) in 2011.

Functional ultrasound is a new neuroimaging modality that allows imaging of brain function at high spatial and temporal resolution. fUS measures variations in cerebral blood flow that occur in response to neuronal activation, a phenomenon known as neurovascular coupling, and therefore provides an indirect measure of brain activity. The underlying principle is similar as what is measured in functional magnetic resonance imaging (fMRI), the current clinical standard for brain imaging. Compared to fMRI, fUS offers several advantages, it is portable, cost-effective, higher temporal resolution, and higher sensitivity to cerebral blood flow. This makes it a promising tool for both preclinical neuroscience, and clinical application. However, there remain significant challenges to overcome before fUS can be widely adopted in clinical settings.

First, the brain is protected by the skull, which poses a barrier for ultrasound waves. The skull bone distorts and attenuates ultrasound signals, leading to decreased transcranial image quality. Therefore, most studies to date are restricted to animal models, where the skull can be surgically removed or thinned. In humans, fUS has been applied during intraoperative procedures, where the skull is removed, and the brain is exposed.
Second, fUS generates enormous amounts of data, which complicates its use in real-time applications.

This thesis addresses both challenges. It focuses on enhancing transcranial image quality, bringing us closer to fully noninvasive, high resolution brain imaging. In addition, it introduces methods for reconfigurable functional imaging, aimed at reducing data rates to enable real time decoding of brain activity into actionable outputs. Together, these advances increase the translational potential of fUS and lower the barrier for clinical and neuroscience adoption.

The field of aberration correction consist in improving image quality by compensating for distortions caused by the medium through which the ultrasound waves travel. In this thesis, we apply aberration correction to restore transcranial image quality.
Aberration correction starts with knowing the exact properties of the ultrasound probe. Chapter 2 introduces a simple method to estimate the speed and thickness of the silicone lens on 1D transducers. This calibration is essential to accurately estimate the speed of sound in a medium, independent of imaging depth and transmission parameters. Using optimal lens parameters, and the estimated sound speed, we demonstrated an improvement in image resolution and contrast.

In chapter 3, attention shifts to the challenge of restoring transcranial image quality. An adaptive aberration correction approach is presented, using ray tracing through four tissue layers: transducer lens, skin, skull, and brain. This model estimates wave speeds in each layer, then reconstructs images based on the actual (refracted) wave paths. Applied to Doppler imaging in rats, the method improves both resolution and sensitivity, especially in cortical areas where skull induced aberrations are strongest.

Chapter 4 takes on the problem of high data rates in 3D imaging. Since functional activation in the brain is typically sparse, volumetric imaging often captures unnecessary data. Here, a new technique called selective-plane fUS is introduced. It combines focused wave transmission with a Row-Column Addressed (RCA) transducer to target only the brain regions of interest. This significantly reduces the computational and data transfer load and potentially paves the way for lightweight, portable brain-machine interfaces based on fUS.

In chapter 5, the thesis explores imaging of cellular activity and capillary flow using ultrasound contrast agents. We introduce a technique called Nonlinear Sound-sheet Microscopy (NSSM), that enables high resolution imaging of contrast agents within thin planes. This approach captures both vascular and gene expression data in living tissue and extends ultrasound imaging toward cellular resolution in opaque organs.

Together, these chapters lay the technical foundation for next-generation functional and biomolecular ultrasound: systems that are more accurate, less invasive, and better suited for high resolution brain imaging in real time. By addressing both the physical challenges of wave distortion and the computational load of volumetric data, this thesis brings fUS a step closer to clinical and translational neuroscience applications.


...
The field of contrast-enhanced ultrasound (CEUS) combines nonlinearly oscillating microbubbles (MBs) with dedicated pulse sequences to reveal the vascular function of organs. Clinical ultrasound contrast agents consist of polydisperse MB suspensions with diameters ranging from 0.5 to 10 μ⁢m and resonance frequencies ranging from 1 to 15 MHz. As a result, just a small fraction of MBs resonates at a given ultrasound frequency. MB suspensions with narrow size distributions can be tuned for a specific imaging frequency, boost CEUS sensitivity, and enable deeper vascular imaging. However, their enhanced nonlinear behavior makes imaging susceptible to nonlinear-wave-propagation artifacts. Here we numerically investigate the impact of the acoustic wavefront shape on the imaging of nonlinearly oscillating, monodisperse MBs. Specifically, our approach relies on an extension of the iterative nonlinear-contrast-source method that accounts for all nonlinear effects in CEUS. We demonstrate that supersonic X-shaped wavefronts referred to as “X waves” can be used to generate ultrasound images of monodisperse MBs without nonlinear-wave-propagation artifacts. In contrast, imaging based on focused, planar, and diverging wavefronts leads to significant nonlinear artifacts. Taken together, our results show that X waves can harness the full potential of monodisperse MBs by enabling their sensitive and specific detection in a tissue context. ...
Journal article (2024) - Rick Waasdorp, David Maresca, Guillaume Renaud
The influence of the transducer lens on image reconstruction is often overlooked. Lenses usually exhibit a lower sound speed than soft biological tissues. In academic research, the exact lens sound speed and thickness are typically unknown. Here we present a simple and nondestructive method to characterize the lens sound speed and thickness as well as the time to peak of the round-trip ultrasound waveform, another key parameter for optimal image reconstruction. We applied our method to three transducers with center frequencies of 2.5, 7.5 and 15 MHz. We estimated the three parameters with an element-by-element transmission sequence that records internal reflections within the lens. We validated the retrieved parameters using an autofocusing approach that estimates sound speed in water. We show that the combination of our parameters estimation method with two-layer ray tracing outperforms standard image reconstruction. For all transducers, we successfully improved the accuracy of medium sound speed estimation, spatial resolution and contrast. The proposed method is simple and robust and provides an accurate estimation of the transducer lens parameters and of the time to peak of the ultrasound waveform which leads to improved ultrasound image quality. ...
Skeletal muscles generate force, enabling movement through a series of fast electro-mechanical activations coordinated by the central nervous system. Understanding the underlying mechanism of such fast muscle dynamics is essential in neuromuscular diagnostics, rehabilitation medicine and sports biomechanics. The unique combination of electromyography (EMG) and ultrafast ultrasound imaging (UUI) provides valuable insights into both electrical and mechanical activity of muscle fibers simultaneously, the excitation-contraction (E-C) coupling. In this feasibility study we propose a novel non-invasive method to simultaneously track the propagation of both electrical and mechanical waves in muscles using high-density electromyography and ultrafast ultrasound imaging (5000 fps). Mechanical waves were extracted from the data through an axial tissue velocity estimator based on one-lag autocorrelation. The E-C coupling in electrically evoked twitch contractions of the Biceps Brachii in healthy participants could successfully be tracked. The excitation wave (i.e. action potential) had a velocity of 3.9±0.5ms-1 and the subsequent mechanical (i.e. contraction) wave had a velocity of 3.5±0.9ms-1. The experiment showed evidence that contracting sarcomeres that were already activated by the action potential (AP) pull on sarcomeres that were not yet reached by the AP, which was corroborated by simulated contractions of a newly developed multisegmental muscle fiber model, consisting of 500 sarcomeres in series. In conclusion, our method can track the electromechanical muscle dynamics with high spatio-temporal resolution. Ultimately, characterizing E-C coupling in patients with neuromuscular diseases (e.g. Duchenne or Becker muscular dystrophy) may assess contraction efficiency, monitor the progression of the disease, and determine the efficacy of new treatment options. ...
Conference paper (2019) - R. Waasdorp, W. Mugge, H. J. Vos, J.H. de Groot, N. De Jong, M. D. Verweij, A. C. Schouten, V. Daeichin
Current methods to track the progression and evaluate treatment of muscular dystrophies are scarce. The electromechanical delay (EMD), defined as the time lag from muscle electrical activity to motion onset, has been proposed as a biomarker, but provides only limited insight in the pathophysiol-ogy of muscle function. This work proposes and evaluates a novel method to track the propagation of electromechanical waves in muscles, using high density electromyography and ultrafast ultrasound imaging. Muscle contractions in three healthy subjects were evoked by electrical stimulation, and the subsequent propagating action potentials were successfully tracked in all 90 trials. Contractile waves were detected in 83 recordings. Detection rate varied across muscle depth. Mean (SD) velocities for the action potential were 3.71 (0.08) m/s, 4.73 (0.35) m/s and 3.27 (0.09) m/s for participant 1, 2 and 3 respectively. Velocities for the contractile wave were 3.83 (1.07) m/s, 3.32 (0.78) m/s and 3.41 (0.69) m/s for participant 1, 2 and 3 respectively. In conclusion, our technique can track the fast muscular electromechanical dynamics with high spatiotemporal resolution by combining ultrafast ultrasound imaging and high-density electromyography. ...
Desktop inkjet printers are ubiquitous and relatively inexpensive among the variety of available printers. These inkjet printers use an array of micro fluidic pumps, nozzles based on piezoelectric actuation, to dispense individual picoliter volume ink droplets at high speed. In this paper, we show that individual pumps in desktop printers can be accessed to dispense droplets on demand. Access was obtained using the printer’s command language programming. A detailed description of the access procedure is discussed. Droplets were printed on a paper as it rolled underneath the printhead, and with a minor hardware modification, they were also printed on a glass substrate. With this access, individual droplets were deposited, the smallest having an average diameter of 62 μm with a standard deviation of 6.9 μm, with a volume of ∼4 pL. From the intended position, the droplets had a standard deviation of 5.4 μm and 8.4 μm in the vertical and horizontal directions, respectively. The ink droplets were dispensed at a rate of 7.1 kHz. A circularity factor of 0.86 was obtained indicating that the dispensed droplets are of good quality. By replacing the ink in the cartridges with liquids of choice (e.g. cells, proteins, nanoparticles etc.), we believe it provides an opportunity for low-cost, high-speed, high-precision, picoliter volume printing for a variety of applications. ...