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M.A. Siddiqi

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An overview from bio-inspiration to hardware architectures and learning mechanisms

Journal article (2026) - Anteneh Gebregiorgis, Amirreza Yousefzadeh, Sherif Eissa, Muhammad Ali Siddiqi, Charlotte Frenkel, Friedemann Zenke, Sander Bohte, Abdulqader Nael Mahmoud, Said Hamdioui, More authors...
The endeavor to emulate the extraordinary efficiency and adaptability inherent in the human brain via spike-based neuromorphic computing presents significant potential across a diverse array of applications. The attainment of this objective necessitates the translation of biological principles into artificial systems, a task that continues to pose a complex challenge requiring a profound comprehension of the mechanisms by which neural systems produce robust computational outcomes. This tutorial paper provides a comprehensive overview of the foundational concepts and emerging design trends in spike-based neuromorphic computing, covering advances from materials and circuits to hardware architectures and learning mechanisms. It begins with an examination of key aspects of brain biology and their influence on neuromorphic design, followed by a brief discussion of biologically plausible neuron and synapse models. The paper then defines the core principles and defining attributes of neuromorphic computing, highlighting the trade-offs and design choices underlying current implementations. Building on these foundations, it explores the critical properties of neuromorphic systems, surveys a variety of learning algorithms, and reviews hardware-level realizations of bioinspired neurons and synapses. Subsequent sections discuss state-of-the-art spiking neural network architectures, mapping and compilation strategies, and representative application domains. By providing this end-to-end perspective, the article aims to guide the development of future neuromorphic systems that more closely emulate brain efficiency, scalability, and resilience. ...
Journal article (2025) - Jeroen J.A. Vermeulen, Georgii Krivoshein, Sumit Diware, Muhammad Ali Siddiqi, Arn M.J.M. van den Maagdenberg, Else A. Tolner, Said Hamdioui, Rajendra Bishnoi
Approximately one-third of individuals with chronic epilepsy, a condition resulting from uncontrolled brain activity, do not respond to medication. Animal models are widely used to investigate the mechanism underlying epilepsy, so better drug treatments can be developed for this disease. In such studies, epileptiform activity, assessed by EEG recordings, can be used as a marker for the development of the disease. However, the analysis of EEG recordings is typically done manually, which is time-consuming, subject to observer bias, error-prone, and lacks consistency and efficiency. In this paper, we develop a novel automated methodology for detecting and classifying epileptiform activity, which is tested using the intrahippocampal kainic acid (IHKA) mouse model, a representation of human temporal lobe epilepsy. For that, EEG/LFP recordings are obtained from biological experiments using the IHKA mouse model for data acquisition. We use a spike detection method that combines an improved version of the nonlinear energy operator (NEO) with the automatic NEO thresholding (ANT) algorithm. The proposed method is implemented in Python as an automated and time-efficient algorithm, given its adaptability to different spike and epileptiform event criteria, making it suitable for use in preclinical and potentially future clinical studies. Using our proposed methodology, we achieve a 93.1% accuracy in detecting epileptiform events and a 95.8% accuracy in classification. Moreover, the time for analysis of EEG recordings was reduced by 98.8% compared to manual analysis. Additionally, to demonstrate the potential of the algorithm for brain–machine interfaces (BMI) applications, we develop a hardware architecture and implement it using both an application-specific integrated circuit (ASIC) and a field programmable gate array (FPGA). The FPGA shows the feasibility of near real-time implementation, and for our ASIC implementation, we achieve a post-layout area of 9114 µm2 with a dynamic power consumption of 16.09 μW using TSMC 40 nm technology. ...
Introduction: In 2012, potassium and sodium ion channels in Hodgkin-Huxley-based brain models were shown to exhibit memristive behavior. This positioned memristors as strong candidates for implementing biologically accurate artificial neurons. Memristor-based brain simulations offer advantages in energy efficiency, scalability, and compactness, benefiting fields such as soft robotics, embedded systems, and neuroprosthetics. Methods: Previous approaches used current-controlled Mott memristors, which poorly matched the voltage-controlled nature of ion channels. This study employs volatile, oxide-based memristors that leverage electric-field-driven oxygen-vacancy migration to emulate voltage-dependent channel behavior. We selected candidate WOx and NbOx memristors and modeled their dynamics to verify performance as Hodgkin-Huxley potassium channels. Results: The device exhibits sigmoidal gating and voltage-dependent time constants consistent with the theoretical model. By scaling the passive circuitry around the memristors, we show that they capture the essential mechanisms of potassium ion-channels, although spike height is reduced due to strong non-linear voltage-dependence. Still, by cascading multiple compartments, typical spike propagation is retained. Discussion: This is the first demonstration of a voltage-controlled memristor replicating the Hodgkin-Huxley potassium channel, validating its potential for more efficient brain simulation hardware. ...

A Review and Design Guide for Memristor-Based Approaches

Computational-neuroscience research is increasingly in need of larger, biophysically realistic brain models. These analog-in-nature models build upon the Hodgkin-Huxley (HH) formalism and are run on digital, high-performance computing systems making simulation very computationally expensive. In circuit form, these models are theoretically suitable for efficient analog implementation. However, the ion-channel components –predominantly, sodium and potassium– are nonlinear, time-varying resistors, lacking an efficient implementation. Chua et al. proved that these ion-channel models are in fact memristors –devices with a conductance as a function of applied-voltage history– claiming that “memristors are the right stuff for building brains”. However, the kind of actual memristor implementation that is the right one for building brains is not defined. In this article, the device class and characteristics of such memristors are defined and existing memristive implementations of HH-like designs are then reviewed. Surprisingly, although often misclassified as such, no physical implementation currently exists that replicates the original HH equations faithfully or efficiently. Having put forward the desired memristor properties, a design guide for screening suitable memristor designs is then proposed. Screening the existing literature reveals that suitable devices likely already exist for potassium ion-channel emulation, while none exists for sodium; this calls for further investigation of higher-order, voltage-controlled and volatile memristors. ...
Conference paper (2025) - K. Fatima, V. Romano, C. Strydis, M.A. Siddiqi
Studying Purkinje cell activity is vital for understanding brain function and movement disorders. However, conventional wired headstage setups in mice restrict natural behavior, while transmitting full neural waveforms wirelessly is prohibitively power-intensive. This work presents a lightweight, real-time spike sorting system implemented on the EFM32PG28 microcontroller, capable of classifying complex spikes and simple spikes from Purkinje cells directly on the headstage. By extracting only relevant spike information, the system enables efficient wireless transmission or local storage. Leveraging knowledge distillation and Matrix Vector Processor (MVP) hardware acceleration, the spike sorter achieves an overall $\mathbf{F 1}$-score of 93.43% and completes detection and classification in 0.765 ms. With over 53 hours of continuous operation on a $50-\mathrm{mAh}$ battery, the proposed solution is well-suited for long-duration, untethered cerebellar experiments in freely moving mice. ...

From Single-Target to Brain-Network Modulation: Why and What Is Needed?

Objectives: Current techniques in brain stimulation are still largely based on a phrenologic approach that a single brain target can treat a brain disorder. Nevertheless, meta-analyses of brain implants indicate an overall success rate of 50% improvement in 50% of patients, irrespective of the brain-related disorder. Thus, there is still a large margin for improvement. The goal of this manuscript is to 1) develop a general theoretical framework of brain functioning that is amenable to surgical neuromodulation, and 2) describe the engineering requirements of the next generation of implantable brain stimulators that follow from this theoretic model. Materials and Methods: A neuroscience and engineering literature review was performed to develop a universal theoretical model of brain functioning and dysfunctioning amenable to surgical neuromodulation. Results: Even though a single target can modulate an entire network, research in network science reveals that many brain disorders are the consequence of maladaptive interactions among multiple networks rather than a single network. Consequently, targeting the main connector hubs of those multiple interacting networks involved in a brain disorder is theoretically more beneficial. We, thus, envision next-generation network implants that will rely on distributed, multisite neuromodulation targeting correlated and anticorrelated interacting brain networks, juxtaposing alternative implant configurations, and finally providing solid recommendations for the realization of such implants. In doing so, this study pinpoints the potential shortcomings of other similar efforts in the field, which somehow fall short of the requirements. Conclusion: The concept of network stimulation holds great promise as a universal approach for treating neurologic and psychiatric disorders. ...
Next-generation personalized healthcare devices are undergoing extreme miniaturization in order to improve user acceptability. However, such developments make it difficult to incorporate cryptographic primitives using available target tech-nologies since these algorithms are notorious for their energy consumption. Besides, strengthening these schemes against side-channel attacks further adds to the device overheads. Therefore, viable alternatives among emerging technologies are being sought. In this work, we investigate the possibility of using memristors for implementing lightweight encryption. We propose a 40-nm RRAM-based GIFT-cipher implementation using a 1TIR configuration with promising results; it exhibits roughly half the energy consumption of a CMOS-only implementation. More importantly, its non-volatile and reconfigurable substitution boxes offer an energy-efficient protection mechanism against side-channel attacks. The complete cipher takes 0.0034 mm2of area, and encrypting a 128-bit block consumes a mere 242 pJ. ...
A Medical Body Area Network (MBAN) is an ensemble of collaborating, potentially heterogeneous, medical devices located inside, on the surface of or around the human body with the objective of tackling one or multiple medical conditions of the MBAN host. These devices-which are a special category of Wireless Body Area Networks (WBANs)–collect, process and transfer medical data outside of the network, while in some cases they also administer medical treatment autonomously. Since communication is so pivotal to their operation, the newfangled IEEE 802.15.6 standard is aimed at the communication aspects of WBANs. It places a set of physical and communication constraints while it also includes association/disassociation protocols and security services that WBAN applications need to comply with. However, the security specifications put forward by the standard can be easily shown to be insufficient when considering realistic MBAN use cases and need further enhancements. The present work addresses these shortcomings by, first, providing a structured analysis of the IEEE 802.15.6 security features and, afterwards, proposing comprehensive and tangible recommendations on improving the standard’s security. ...
Journal article (2021) - Muhammad Ali Siddiqi, Robert H.S.H. Beurskens, Pieter Kruizinga, Chris I. De Zeeuw, Christos Strydis
Modern Implantable Medical Devices (IMDs) are vulnerable to security attacks because of their wireless connectivity to the outside world. One of the main security challenges is establishing trust between the IMD and an external reader/programmer in order to facilitate secure communication. Numerous device-pairing schemes have been proposed to address this specific challenge. However, they alone cannot protect against a battery-depletion attack in which the adversary is able to keep the IMD occupied with continuous authentication requests until the battery empties. As a result, energy harvesting has been employed as an ancillary mechanism for implementing Zero-Power Defense (ZPD) functionality in order to protect against such a low-cost attack. In this paper, we propose SecureEcho, a device-pairing scheme based on MHz-range ultrasound that establishes trust between the IMD and an external reader. In addition, SecureEcho achieves ZPD without requiring any energy harvesting, which significantly reduces the design complexity. We also provide a proof-of-concept implementation and a first ever security evaluation of the ultrasound channel, which proves that it is infeasible for the attacker to eavesdrop or insert messages even from a range of a few millimeters. ...
Conference paper (2021) - Muhammad Ali Siddiqi, Angeliki Agathi Tsintzira, Georgios Digkas, Miltiadis Siavvas, Christos Strydis
Implantable Medical Devices (IMDs) belong to a class of highly life-critical, resource-constrained, deeply embedded systems out there. Their gradual conversion to wirelessly accessible devices in recent years has made them amenable to numerous successful ethical-hacking attempts. These attacks were made possible due to the absence of proper security provisions in IMDs. IMD manufacturers have only very recently started taking cybersecurity threats seriously, a move that will force development teams to overhaul IMD designs and grow sharper reflexes in an industry that has historically opted for small, careful steps. Thus, valid concerns arise regarding the technical feasibility but, chiefly, the economic viability of adding security to IMDs. In this work, we assess the economic repercussions of securing IMDs by employing the concept of technical debt (TD) on the evolving IMD software. Our quantitative analysis reveals that security-related costs are currently well in hand, however, security-code TD amasses faster and will eventually overtake medical-code TD. The economic viability of IMDs will, thus, be ensured only if security-development efforts are allocated significant resources within the next decade. ...

Shielding IMDs from Battery-Depletion Attacks

The wireless capabilities of modern Implantable Medical Devices (IMDs) make them vulnerable to security attacks. One prominent attack, which has disastrous consequences for the patient’s wellbeing, is the battery Denial-of-Service attack whereby the IMD is occupied with continuous authentication requests from an adversary with the aim of depleting its battery. Zero-Power Defense (ZPD), based on energy harvesting, is known to be an excellent protection against these attacks. This paper raises essential design considerations for employing ZPD techniques in commercial IMDs, offers a critical review of ZPD techniques found in literature and, subsequently, gives crucial recommendations for developing comprehensive ZPD solutions. ...

Architecting a Secure Protocol for Implantable Medical Devices

Journal article (2020) - Muhammad Ali Siddiqi, Christian Doerr, Christos Strydis
Over the past decade, focus on the security and privacy aspects of implantable medical devices (IMDs) has intensified, driven by the multitude of cybersecurity vulnerabilities found in various existing devices. However, due to their strict computational, energy and physical constraints, conventional security protocols are not directly applicable to IMDs. Custom-tailored schemes have been proposed instead which, however, fail to cover the full spectrum of security features that modern IMDs and their ecosystems so critically require. In this paper we propose IMDfence, a security protocol for IMD ecosystems that provides a comprehensive yet practical security portfolio, which includes availability, non-repudiation, access control, entity authentication, remote monitoring and system scalability. The protocol also allows emergency access that results in the graceful degradation of offered services without compromising security and patient safety. The performance of the security protocol as well as its feasibility and impact on modern IMDs are extensively analyzed and evaluated. We find that IMDfence achieves the above security requirements at a mere less than 7% increase in total IMD energy consumption, and less than 14 ms and 9 kB increase in system delay and memory footprint, respectively. ...